Convert one CSV into standardized mmviz schema

Usage

convert_mmviz_csv(
  path,
  out_path = NULL,
  task = c("watermaze", "minefield"),
  overwrite = FALSE,
  include_optional = TRUE,
  keep_extra = FALSE,
  subject_id = NULL,
  group = NULL,
  trial_id = NULL
)

Arguments

path: Input CSV file path (legacy or standard).
out_path: Output CSV file path. Defaults to <input_stem>_standard.csv.
task: One of watermaze or minefield.
overwrite: Whether to overwrite an existing output file.
include_optional: Whether to include optional columns (time_sec, event) when present.
keep_extra: Whether to keep extra non-schema columns in output.
subject_id: Optional override for all rows.
group: Optional override for all rows.
trial_id: Optional override for all rows.

Value

A one-row data frame with conversion metadata.

Examples

source <- system.file("templates", "watermaze_template.csv", package = "MMV")
output <- tempfile(fileext = ".csv")
convert_mmviz_csv(source, output, overwrite = TRUE)
#>        task
#> 1 watermaze
#>                                                             input_file
#> 1 /home/runner/work/_temp/Library/MMV/templates/watermaze_template.csv
#>                           output_file source_format rows
#> 1 /tmp/RtmpHj0t8v/file1d4a6762ccc.csv      standard   20